Tag Archives: XML

Adding Semantics to XML Schemas

Recently, I was working on a UniProt parser for the next BioGroovy release, and while looking through the UniProt schema I started to wonder why the elements in schemas weren’t annotated with references to ontologies?  Let’s take a look at … Continue reading

Posted in Bioinformatics, Informatics, Science Blogging, Semantic Web | Tagged , , | 2 Comments

Downloading PubMed Articles

The PubMed Central Open Access archive, contains the full text of a subset of the articles available through PubMed.  It’s very useful for text mining.  In this blog entry, I’ll show you how to search for and download the XML-encoded … Continue reading

Posted in Bioinformatics, Informatics, Uncategorized | Tagged , , , , | 2 Comments

BioGroovy and the Semantic Web

Recently, I found myself putting together a presentation on BioGroovy.  One of the key features that I’ve been taking advantage of is the ability to use BioGroovy models as Grails domain objects.  This makes it possible to easily download and … Continue reading

Posted in Bioinformatics, Informatics, Semantic Web | Tagged , , , , | Leave a comment