Tag Archives: Cytoscape

JavaScript Libraries for Informatics

During our monthly San Diego Informatics Lunch meeting, the topic of conversation was JavaScript libraries for informatics.  Over the past few years the term “thick client application” has gradually morphed from a reference to desktop applications, to JavaScript-heavy browser-based applications.  Driven in … Continue reading

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Ideas from the Cytoscape Workshop

During the recent Cytoscape workshop, I started out re-acquainting myself with Cytoscape and learning about some of the new features.  As I did so, I found myself accumulating a wishlist of features that I thought I would share: Using Templates … Continue reading

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Notes from the Cytoscape Workshop

Recently, the Sanford Burnham Consortium hosted a workshop on Cytoscape.  Cytoscape is a tool for representing networks.  It’s primary users are biologists wanting to understand different types of biological networks, but it can also be used for computer networks, or … Continue reading

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Free Software For Scientists – Cytoscape

A few years ago, a medical writer friend of mine showed me a paper on a new tool called Cytoscape.  He said, “see what you think of it, and let me know.”  At the time we were both working on … Continue reading

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